Strange that you get a timeout error for that, cause I think you do not have to many fulltext indeces in your system. I do not know any other option to trigger the text analysis. The options offered by the alter fulltext index statement seems to just be related for already processed documents (but of course you can try to use the activate/flush option of it; ALTER FULLTEXT INDEX - SAP HANA SQL and System Views Reference - SAP Library).
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